Files
glucose-dashboard/pdf_export.py
T
willemjan 29d20ca441 fix: Nightscout API silently truncated multi-day fetches to ~3-4 days
_entries_since/_treatments_since requested a single page via `count`,
but Nightscout's /api/v1/entries and /api/v1/treatments ignore a large
`count` and cap the response around ~1150/~700 documents regardless of
how far back the requested period goes. Every report page relying on
fetch_entries_range/fetch_treatments_range (7/14/30/90-day selectors)
was silently only getting the most recent ~3-4 days, no matter the
selected period.

Fixed by paginating with `find[date][$lte]` cursors in a new
_paginated_get(), walking back until the requested `since` boundary is
reached or the server returns a short/empty page (= genuinely no more
data, confirmed by manually paginating against the real instance:
entries go back 50+ days, treatments only ~4 days on this install).

Also added reporting.completeness_warning(), shared by the interactive
pages (via ui_common.render_completeness_warning) and the PDF export,
that distinguishes "a structural gap at the start of the period" (data
wasn't fetched/available) from "scattered gaps below the clinical AGP
coverage threshold" (Danne et al. 2017) — the previous single generic
"X% sensor coverage" message read as a CGM/sensor problem even when
the real cause was this fetch bug.
2026-07-31 14:21:35 +02:00

143 lines
4.8 KiB
Python

"""
PDF-rapportgeneratie voor geselecteerde rapportageonderdelen (FR10).
Gebruikt fpdf2 (puur Python, geen systeemdependencies) voor de PDF-opbouw en
matplotlib voor een eenvoudige statische AGP-grafiek specifiek voor de PDF —
bewust niet dezelfde Plotly-figuren als op de pagina's zelf (die zouden
kaleido vereisen, met een ingebakken Chromium-build: een groter image en meer
Trivy-oppervlak, voor dit doel niet nodig).
"""
from __future__ import annotations
import io
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
import pandas as pd
from fpdf import FPDF
from fpdf.enums import XPos, YPos
from reporting import (
agp_percentile_bands,
completeness_warning,
gmi_percent,
percent_cv,
sensor_active_percent,
tir_breakdown_5band,
)
SECTION_SUMMARY = "Samenvatting"
SECTION_AGP = "AGP profiel"
SECTION_EVENTS = "Hypo-/hyperevents"
AVAILABLE_SECTIONS = [SECTION_SUMMARY, SECTION_AGP, SECTION_EVENTS]
_LINE_KWARGS = {"new_x": XPos.LMARGIN, "new_y": YPos.NEXT}
def _agp_figure_png(glucose: pd.DataFrame) -> bytes:
bands = agp_percentile_bands(glucose)
fig, ax = plt.subplots(figsize=(7, 3))
hours = bands["minute_of_day"] / 60
ax.fill_between(hours, bands["p5"], bands["p95"], alpha=0.15, color="#2a78d6", label="5e-95e pct")
ax.fill_between(hours, bands["p25"], bands["p75"], alpha=0.3, color="#2a78d6", label="25e-75e pct")
ax.plot(hours, bands["p50"], color="#2a78d6", linewidth=2, label="Mediaan")
ax.set_xlabel("Uur van de dag")
ax.set_ylabel("mmol/L")
ax.set_xlim(0, 24)
ax.legend(loc="upper right", fontsize=8)
fig.tight_layout()
buf = io.BytesIO()
fig.savefig(buf, format="png", dpi=150)
plt.close(fig)
buf.seek(0)
return buf.getvalue()
def _add_summary_section(pdf: FPDF, glucose: pd.DataFrame, start, end) -> None:
mean_mmol = glucose["mmol"].mean()
tir = tir_breakdown_5band(glucose)
active_pct = sensor_active_percent(glucose, start, end)
pdf.set_font("Helvetica", "B", 13)
pdf.cell(0, 8, "Samenvatting", **_LINE_KWARGS)
warning = completeness_warning(glucose, start, end)
if warning:
pdf.set_font("Helvetica", "BI", 10)
pdf.multi_cell(0, 5, warning)
pdf.ln(2)
pdf.set_font("Helvetica", "", 11)
pdf.cell(0, 6, f"Sensordekking: {active_pct:.0f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"Gemiddelde glucose: {mean_mmol:.1f} mmol/L", **_LINE_KWARGS)
pdf.cell(0, 6, f"Geschat HbA1c (GMI): {gmi_percent(mean_mmol):.1f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"Variabiliteit (%CV): {percent_cv(glucose):.0f}%", **_LINE_KWARGS)
pdf.ln(2)
pdf.cell(0, 6, f"Zeer laag (<3.0 mmol/L): {tir['very_low']:.0f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"Laag (3.0-3.9 mmol/L): {tir['low']:.0f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"In bereik (3.9-10.0 mmol/L): {tir['in_range']:.0f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"Hoog (10.0-13.9 mmol/L): {tir['high']:.0f}%", **_LINE_KWARGS)
pdf.cell(0, 6, f"Zeer hoog (>13.9 mmol/L): {tir['very_high']:.0f}%", **_LINE_KWARGS)
pdf.ln(4)
def _add_agp_section(pdf: FPDF, glucose: pd.DataFrame) -> None:
pdf.set_font("Helvetica", "B", 13)
pdf.cell(0, 8, "AGP profiel", **_LINE_KWARGS)
png_bytes = _agp_figure_png(glucose)
pdf.image(io.BytesIO(png_bytes), w=180)
pdf.ln(4)
def _add_events_section(pdf: FPDF, events_summary: dict[str, dict]) -> None:
pdf.set_font("Helvetica", "B", 13)
pdf.cell(0, 8, "Hypo-/hyperevents", **_LINE_KWARGS)
pdf.set_font("Helvetica", "", 11)
for label, summary in events_summary.items():
pdf.cell(
0,
6,
f"{label}: {summary['count']} events, gemiddeld {summary['avg_duration_minutes']:.0f} min, "
f"{summary['events_per_week']:.1f}/week",
**_LINE_KWARGS,
)
pdf.ln(4)
def build_report_pdf(
sections: list[str],
glucose: pd.DataFrame,
events_summary: dict[str, dict],
start,
end,
) -> bytes:
"""Bouw een PDF met de geselecteerde onderdelen.
`events_summary` bevat vooraf berekende hypo/hyper-samenvattingen (label ->
resultaat van reporting.summarize_events), zodat deze module geen
event-detectie hoeft te herhalen.
"""
pdf = FPDF()
pdf.add_page()
pdf.set_font("Helvetica", "B", 16)
pdf.cell(0, 10, "Glucoserapport", **_LINE_KWARGS)
pdf.set_font("Helvetica", "", 11)
pdf.cell(0, 8, f"Periode: {start.strftime('%d-%m-%Y')} t/m {end.strftime('%d-%m-%Y')}", **_LINE_KWARGS)
pdf.ln(4)
if not glucose.empty:
if SECTION_SUMMARY in sections:
_add_summary_section(pdf, glucose, start, end)
if SECTION_AGP in sections:
_add_agp_section(pdf, glucose)
if SECTION_EVENTS in sections and events_summary:
_add_events_section(pdf, events_summary)
return bytes(pdf.output())