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2
Commits
| Author | SHA1 | Date | |
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25c3fe6730 | ||
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374ead70e5 |
+56
-11
@@ -9,12 +9,13 @@ from reporting import (
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basal_stats,
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bolus_stats,
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day_of_week_pattern,
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gmi_percent,
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gmi_trend,
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overnight_daytime_split,
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site_interval_stats,
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)
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from ui_common import (
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get_colors,
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hex_to_rgba,
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load_range_data,
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render_completeness_warning,
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select_period_days,
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@@ -46,26 +47,70 @@ render_completeness_warning(glucose, start, end)
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colors = get_colors()
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events = classify_treatments(treatments)
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# --- FR7: geschat HbA1c (GMI) per maand ------------------------------------
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st.subheader("Geschat HbA1c (GMI) per maand")
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monthly = glucose.copy()
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monthly["month"] = monthly["timestamp"].dt.to_period("M").astype(str)
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monthly_gmi = monthly.groupby("month")["mmol"].mean().apply(gmi_percent)
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# --- FR7: geschat HbA1c (GMI) trend ----------------------------------------
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st.subheader("Geschat HbA1c (GMI) trend")
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trend = gmi_trend(glucose)
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if len(monthly_gmi) >= 1:
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fig = go.Figure(
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go.Bar(x=monthly_gmi.index, y=monthly_gmi.to_numpy(), marker_color=colors["glucose"])
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if len(trend) >= 2:
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fig = go.Figure()
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fig.add_trace(
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go.Scatter(
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x=trend["date"], y=trend["trend_upper"], mode="lines", line={"width": 0}, showlegend=False,
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hoverinfo="skip",
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)
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)
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fig.add_trace(
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go.Scatter(
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x=trend["date"],
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y=trend["trend_lower"],
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mode="lines",
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line={"width": 0},
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fill="tonexty",
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fillcolor=hex_to_rgba(colors["muted"], 0.2),
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name="95% betrouwbaarheidsband",
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hoverinfo="skip",
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)
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)
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fig.add_trace(
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go.Scatter(
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x=trend["date"],
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y=trend["trend"],
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mode="lines",
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line={"color": colors["muted"], "width": 2, "dash": "dash"},
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name="Trend (lineair)",
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)
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)
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fig.add_trace(
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go.Scatter(
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x=trend["date"],
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y=trend["rolling_avg"],
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mode="lines",
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line={"color": colors["glucose"], "width": 2},
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name="Voortschrijdend gemiddelde (7d)",
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)
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)
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fig.add_trace(
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go.Scatter(
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x=trend["date"],
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y=trend["gmi"],
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mode="markers",
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marker={"color": colors["glucose"], "size": 5, "opacity": 0.5},
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name="Dag-GMI",
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)
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)
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fig.update_layout(
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paper_bgcolor="rgba(0,0,0,0)",
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plot_bgcolor="rgba(0,0,0,0)",
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font_color=colors["text"],
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height=280,
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height=320,
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margin={"l": 10, "r": 10, "t": 10, "b": 10},
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yaxis={"title": "GMI (%)", "gridcolor": colors["grid"]},
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xaxis={"title": "Maand", "gridcolor": colors["grid"]},
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xaxis={"title": "Datum", "gridcolor": colors["grid"]},
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legend={"orientation": "h", "yanchor": "bottom", "y": 1.02, "xanchor": "left", "x": 0},
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)
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st.plotly_chart(fig, width="stretch")
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else:
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st.info("Niet genoeg dagen met data voor een trendlijn (minstens 2 nodig).")
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st.caption("GMI is een schatting (Bergenstal et al. 2018), geen labwaarde.")
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# --- FR8: nacht vs. overdag --------------------------------------------------
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@@ -11,6 +11,7 @@ from __future__ import annotations
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from itertools import pairwise
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import numpy as np
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import pandas as pd
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from nightscout_client import INSULIN_EVENT_TYPES
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@@ -35,6 +36,68 @@ def gmi_percent(mean_mmol: float) -> float:
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return round(3.31 + 0.4311 * mean_mmol, 1)
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GMI_TREND_COLUMNS = ["date", "gmi", "rolling_avg", "trend", "trend_lower", "trend_upper"]
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def daily_gmi(glucose: pd.DataFrame) -> pd.DataFrame:
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"""Geschat HbA1c (GMI) per kalenderdag — scatterpunten voor de trendgrafiek (gitea #19)."""
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if glucose.empty:
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return pd.DataFrame(columns=["date", "gmi"])
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df = glucose.copy()
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df["date"] = df["timestamp"].dt.date
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daily_mean = df.groupby("date")["mmol"].mean()
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result = daily_mean.apply(gmi_percent).reset_index()
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result.columns = ["date", "gmi"]
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return result.sort_values("date").reset_index(drop=True)
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def gmi_trend(glucose: pd.DataFrame, rolling_window_days: int = 7) -> pd.DataFrame:
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"""Dagelijkse GMI-punten plus voortschrijdend gemiddelde en een lineaire
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trendlijn met 95%-betrouwbaarheidsband (gitea #19).
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Gebruikt een normaalbenadering (z=1.96) voor de betrouwbaarheidsband i.p.v.
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een exacte t-verdeling — dat zou een scipy-dependency toevoegen aan een
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verder bewust lichte container (dezelfde afweging als het niet gebruiken
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van kaleido in pdf_export.py). Bij de hier gebruikelijke steekproefgroottes
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(14-90 dagpunten) is het verschil met de exacte t-kritieke waarde
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verwaarloosbaar voor een visuele trendindicatie.
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Elke keer opnieuw berekend uit de al-opgehaalde periode-data (geen aparte
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database) — de bestaande 1-uurs Streamlit-cache op load_range_data()
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voorkomt al herhaalde Nightscout-calls voor dezelfde periode. Bij een
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veel langere trend (jaren i.p.v. de huidige max. 90 dagen) zou een aparte
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opslag wél de moeite waard worden.
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"""
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daily = daily_gmi(glucose)
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if len(daily) < 2:
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return daily.reindex(columns=GMI_TREND_COLUMNS)
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daily = daily.copy()
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daily["rolling_avg"] = daily["gmi"].rolling(window=rolling_window_days, min_periods=1).mean()
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x = np.arange(len(daily), dtype=float)
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y = daily["gmi"].to_numpy()
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slope, intercept = np.polyfit(x, y, 1)
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fitted = intercept + slope * x
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residuals = y - fitted
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degrees_of_freedom = max(len(x) - 2, 1)
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residual_std = np.sqrt(np.sum(residuals**2) / degrees_of_freedom)
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x_mean = x.mean()
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sum_sq_x = np.sum((x - x_mean) ** 2)
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standard_error = (
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np.zeros_like(x)
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if sum_sq_x == 0
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else residual_std * np.sqrt(1 / len(x) + (x - x_mean) ** 2 / sum_sq_x)
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)
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z_95 = 1.96
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daily["trend"] = fitted
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daily["trend_lower"] = fitted - z_95 * standard_error
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daily["trend_upper"] = fitted + z_95 * standard_error
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return daily[GMI_TREND_COLUMNS]
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def percent_cv(glucose: pd.DataFrame) -> float:
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"""Glucosevariabiliteit als %CV (standaarddeviatie / gemiddelde * 100)."""
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if glucose.empty:
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@@ -4,13 +4,16 @@ import pandas as pd
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import pytest
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from reporting import (
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GMI_TREND_COLUMNS,
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agp_percentile_bands,
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basal_stats,
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bolus_stats,
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completeness_warning,
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daily_gmi,
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day_of_week_pattern,
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detect_events,
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gmi_percent,
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gmi_trend,
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minutes_per_day,
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overnight_daytime_split,
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percent_cv,
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@@ -32,6 +35,57 @@ def test_gmi_percent_matches_bergenstal_formula():
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assert gmi_percent(7.0) == pytest.approx(6.3, abs=0.05)
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def test_daily_gmi_aggregates_per_calendar_day():
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glucose = _series(
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[
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("2026-01-01 08:00", 6.0),
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("2026-01-01 20:00", 8.0),
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("2026-01-02 08:00", 7.0),
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]
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)
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result = daily_gmi(glucose)
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assert list(result["date"].astype(str)) == ["2026-01-01", "2026-01-02"]
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assert result["gmi"].iloc[0] == pytest.approx(gmi_percent(7.0)) # gemiddelde van 6.0 en 8.0
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assert result["gmi"].iloc[1] == pytest.approx(gmi_percent(7.0))
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def test_daily_gmi_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "mmol"])
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result = daily_gmi(empty)
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assert result.empty
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assert list(result.columns) == ["date", "gmi"]
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def test_gmi_trend_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "mmol"])
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result = gmi_trend(empty)
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assert result.empty
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assert list(result.columns) == GMI_TREND_COLUMNS
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def test_gmi_trend_returns_no_line_for_a_single_day():
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glucose = _series([("2026-01-01 08:00", 6.0)])
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result = gmi_trend(glucose)
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assert list(result.columns) == GMI_TREND_COLUMNS
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assert len(result) == 1
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assert pd.isna(result["trend"].iloc[0])
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def test_gmi_trend_fits_increasing_linear_trend_with_band_around_it():
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pairs = [(f"2026-01-{i + 1:02d} 08:00", 6.0 + i * 0.2) for i in range(10)]
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glucose = _series(pairs)
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result = gmi_trend(glucose, rolling_window_days=3)
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assert len(result) == 10
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assert result["trend"].iloc[-1] > result["trend"].iloc[0]
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assert (result["trend_lower"] <= result["trend"]).all()
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assert (result["trend"] <= result["trend_upper"]).all()
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# Vrijwel lineaire input (gmi_percent rondt af op 1 decimaal, dus een
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# kleine restfout blijft over) -> smalle betrouwbaarheidsband.
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assert (result["trend_upper"] - result["trend_lower"]).max() == pytest.approx(0, abs=0.15)
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assert result["rolling_avg"].iloc[-1] > result["rolling_avg"].iloc[0]
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def test_percent_cv_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "mmol"])
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assert percent_cv(empty) == 0.0
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