Merge pull request 'Trends page: GMI trend, weekday pattern, bolus, site-age (FR7, FR8)' (#9) from dev into main
This commit was merged in pull request #9.
This commit is contained in:
@@ -0,0 +1,118 @@
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import plotly.graph_objects as go
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import requests
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import streamlit as st
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from auth import require_auth
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from data_processing import classify_treatments
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from nightscout_client import NightscoutConfigError
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from reporting import (
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bolus_stats,
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day_of_week_pattern,
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gmi_percent,
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overnight_daytime_split,
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site_interval_stats,
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)
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from ui_common import get_colors, load_range_data, select_period_days
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st.set_page_config(page_title="Glucose dashboard — Trends", page_icon="📊", layout="wide")
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require_auth()
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st.title("Trends")
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st.caption("Geschat HbA1c (GMI) over tijd en overige statistieken (FR7, FR8).")
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start, end, days = select_period_days(default_label="90 dagen")
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try:
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glucose, treatments = load_range_data(start, end)
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except NightscoutConfigError as exc:
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st.error(str(exc))
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st.stop()
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except (requests.RequestException, ValueError) as exc:
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st.error(f"Kon geen data ophalen van Nightscout: {exc}")
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st.stop()
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if glucose.empty:
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st.info("Geen glucosemetingen gevonden in deze periode.")
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st.stop()
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colors = get_colors()
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events = classify_treatments(treatments)
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# --- FR7: geschat HbA1c (GMI) per maand ------------------------------------
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st.subheader("Geschat HbA1c (GMI) per maand")
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monthly = glucose.copy()
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monthly["month"] = monthly["timestamp"].dt.to_period("M").astype(str)
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monthly_gmi = monthly.groupby("month")["mmol"].mean().apply(gmi_percent)
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if len(monthly_gmi) >= 1:
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fig = go.Figure(
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go.Bar(x=monthly_gmi.index, y=monthly_gmi.to_numpy(), marker_color=colors["glucose"])
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)
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fig.update_layout(
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paper_bgcolor="rgba(0,0,0,0)",
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plot_bgcolor="rgba(0,0,0,0)",
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font_color=colors["text"],
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height=280,
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margin={"l": 10, "r": 10, "t": 10, "b": 10},
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yaxis={"title": "GMI (%)", "gridcolor": colors["grid"]},
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xaxis={"title": "Maand", "gridcolor": colors["grid"]},
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)
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st.plotly_chart(fig, width="stretch")
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st.caption("GMI is een schatting (Bergenstal et al. 2018), geen labwaarde.")
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# --- FR8: nacht vs. overdag --------------------------------------------------
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st.subheader("Nacht (00:00-06:00) vs. overdag")
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split = overnight_daytime_split(glucose)
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col1, col2 = st.columns(2)
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col1.metric("Tijd in bereik 's nachts", f"{split['overnight']['in_range']:.0f}%")
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col2.metric("Tijd in bereik overdag", f"{split['daytime']['in_range']:.0f}%")
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# --- FR8: patroon per weekdag -------------------------------------------------
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st.subheader("Patroon per weekdag")
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weekday_df = day_of_week_pattern(glucose)
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weekday_plot = weekday_df.dropna(subset=["mean_mmol"])
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if not weekday_plot.empty:
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fig = go.Figure(
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go.Bar(x=weekday_plot["weekday"], y=weekday_plot["mean_mmol"], marker_color=colors["glucose"])
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)
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fig.update_layout(
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paper_bgcolor="rgba(0,0,0,0)",
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plot_bgcolor="rgba(0,0,0,0)",
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font_color=colors["text"],
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height=280,
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margin={"l": 10, "r": 10, "t": 10, "b": 10},
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yaxis={"title": "Gem. glucose (mmol/L)", "gridcolor": colors["grid"]},
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xaxis={"gridcolor": colors["grid"]},
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)
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st.plotly_chart(fig, width="stretch")
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# --- FR8: bolus-insuline --------------------------------------------------
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st.subheader("Bolus-insuline")
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st.caption(
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"Alleen bolusinsuline (maaltijd/correctie/combo/SMB) — basaalinsuline vereist "
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"profielgegevens en is hier niet in verwerkt (zie docs/design-reporting.md)."
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)
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bolus = bolus_stats(treatments)
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col1, col2 = st.columns(2)
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col1.metric("Totaal bolus", f"{bolus['total_units']:.1f} E")
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col2.metric("Aantal boluses", bolus["count"])
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if bolus["by_type"]:
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st.table({"type": list(bolus["by_type"].keys()), "eenheden": list(bolus["by_type"].values())})
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# --- FR8: pompsite-leeftijd vs. glucose/insuline ---------------------------
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st.subheader("Pompsite-leeftijd vs. glucose en insuline")
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st.caption(
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"Statistieken per interval tussen opeenvolgende pompwissels — een benadering "
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"(zonder basaalinsuline) van of insulinebehoefte samenhangt met de leeftijd "
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"van de pompsite."
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)
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site_stats = site_interval_stats(glucose, treatments, events["site_changes"])
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if site_stats.empty:
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st.info("Geen pompwissels gevonden in deze periode.")
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else:
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display = site_stats.copy()
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display["start"] = display["start"].dt.strftime("%d-%m-%Y")
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display["end"] = display["end"].dt.strftime("%d-%m-%Y")
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st.dataframe(display, width="stretch", hide_index=True)
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st.caption(f"Periode: {start.strftime('%d-%m-%Y')} t/m {end.strftime('%d-%m-%Y')}")
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+133
@@ -9,8 +9,12 @@ definities waarop dit gebaseerd is (Battelino et al. 2019, Bergenstal et al.
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from __future__ import annotations
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from itertools import pairwise
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import pandas as pd
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from nightscout_client import INSULIN_EVENT_TYPES
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# Klinische drempels in mmol/L (Battelino et al. 2019, Diabetes Care 42(8):1593-1603).
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VERY_LOW = 3.0
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LOW = 3.9
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@@ -226,3 +230,132 @@ def agp_percentile_bands(glucose: pd.DataFrame, bin_minutes: int = 30) -> pd.Dat
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grouped.columns = ["p5", "p25", "p50", "p75", "p95"]
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grouped = grouped.reset_index().rename(columns={"bin": "minute_of_day"})
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return grouped[AGP_PERCENTILE_COLUMNS].sort_values("minute_of_day").reset_index(drop=True)
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def overnight_daytime_split(
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glucose: pd.DataFrame, overnight_start: int = 0, overnight_end: int = 6
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) -> dict[str, dict]:
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"""Tijd-in-bereik apart voor de nacht (overnight_start-overnight_end uur) en overdag."""
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empty = tir_breakdown_5band(glucose)
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if glucose.empty:
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return {"overnight": empty, "daytime": empty}
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hour = glucose["timestamp"].dt.hour
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is_overnight = (hour >= overnight_start) & (hour < overnight_end)
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return {
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"overnight": tir_breakdown_5band(glucose[is_overnight]),
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"daytime": tir_breakdown_5band(glucose[~is_overnight]),
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}
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WEEKDAY_NAMES = ["Maandag", "Dinsdag", "Woensdag", "Donderdag", "Vrijdag", "Zaterdag", "Zondag"]
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def day_of_week_pattern(glucose: pd.DataFrame) -> pd.DataFrame:
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"""Gemiddelde glucose en tijd-in-bereik per weekdag."""
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columns = ["weekday", "mean_mmol", "in_range_pct", "count"]
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if glucose.empty:
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return pd.DataFrame(columns=columns)
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df = glucose.copy()
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df["weekday"] = df["timestamp"].dt.dayofweek
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rows = []
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for weekday in range(7):
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day_df = df[df["weekday"] == weekday]
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if day_df.empty:
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rows.append(
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{"weekday": WEEKDAY_NAMES[weekday], "mean_mmol": None, "in_range_pct": None, "count": 0}
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)
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continue
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tir = tir_breakdown_5band(day_df)
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rows.append(
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{
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"weekday": WEEKDAY_NAMES[weekday],
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"mean_mmol": round(day_df["mmol"].mean(), 1),
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"in_range_pct": tir["in_range"],
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"count": len(day_df),
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}
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)
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return pd.DataFrame(rows, columns=columns)
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def bolus_stats(treatments: pd.DataFrame) -> dict:
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"""Samenvatting van bolus-insuline, opgesplitst naar type.
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Let op: dit betreft alleen bolusinsuline (maaltijd/correctie/combo/SMB).
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Basaalinsuline wordt hier niet in meegenomen — dat vereist profielgegevens
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(zie docs/design-reporting.md, scoping-kanttekening) en levert dus geen
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volledige totale-dagdosis op.
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"""
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if treatments.empty:
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return {"total_units": 0.0, "count": 0, "by_type": {}}
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bolus = treatments[treatments["eventType"].isin(INSULIN_EVENT_TYPES) & treatments["insulin"].notna()]
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if bolus.empty:
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return {"total_units": 0.0, "count": 0, "by_type": {}}
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by_type = bolus.groupby("eventType")["insulin"].sum().round(1).to_dict()
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return {
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"total_units": round(bolus["insulin"].sum(), 1),
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"count": len(bolus),
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"by_type": by_type,
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}
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SITE_INTERVAL_COLUMNS = [
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"start",
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"end",
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"duration_days",
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"mean_mmol",
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"in_range_pct",
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"total_bolus_units",
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"avg_bolus_units_per_day",
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"total_carbs_g",
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]
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def _site_interval_row(glucose: pd.DataFrame, treatments: pd.DataFrame, start, end) -> dict:
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duration_days = max((end - start).total_seconds() / 86400, 1e-9)
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window_glucose = glucose[(glucose["timestamp"] >= start) & (glucose["timestamp"] < end)]
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window_treatments = (
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treatments[(treatments["timestamp"] >= start) & (treatments["timestamp"] < end)]
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if not treatments.empty
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else treatments
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)
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bolus = bolus_stats(window_treatments)
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total_carbs = window_treatments["carbs"].fillna(0).sum() if not treatments.empty else 0.0
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tir = tir_breakdown_5band(window_glucose)
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return {
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"start": start,
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"end": end,
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"duration_days": round(duration_days, 1),
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"mean_mmol": round(window_glucose["mmol"].mean(), 1) if not window_glucose.empty else None,
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"in_range_pct": tir["in_range"],
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"total_bolus_units": bolus["total_units"],
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"avg_bolus_units_per_day": round(bolus["total_units"] / duration_days, 1),
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"total_carbs_g": round(total_carbs, 0),
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}
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def site_interval_stats(
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glucose: pd.DataFrame, treatments: pd.DataFrame, site_changes: pd.DataFrame
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) -> pd.DataFrame:
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"""Statistieken per interval tussen opeenvolgende pompwissels (FR8).
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Voor elk interval sinds een pompwissel: duur in dagen ("leeftijd" van de
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pompsite bij het einde van het interval), gemiddelde glucose,
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tijd-in-bereik, en bolus-insuline/koolhydraten in dat interval — als
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benadering van of insulinebehoefte samenhangt met de leeftijd van de
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pompsite. Zie bolus_stats() voor de kanttekening dat basaalinsuline hier
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niet in zit.
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"""
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if site_changes.empty or glucose.empty:
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return pd.DataFrame(columns=SITE_INTERVAL_COLUMNS)
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change_times = sorted(site_changes["timestamp"])
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boundaries = [*change_times, glucose["timestamp"].max()]
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rows = [_site_interval_row(glucose, treatments, start, end) for start, end in pairwise(boundaries)]
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return pd.DataFrame(rows, columns=SITE_INTERVAL_COLUMNS)
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@@ -3,11 +3,15 @@ import pytest
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from reporting import (
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agp_percentile_bands,
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bolus_stats,
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day_of_week_pattern,
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detect_events,
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gmi_percent,
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minutes_per_day,
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overnight_daytime_split,
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percent_cv,
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sensor_active_percent,
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site_interval_stats,
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summarize_events,
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tir_breakdown_5band,
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)
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@@ -243,6 +247,114 @@ def test_agp_percentile_bands_handles_empty_input():
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assert list(result.columns) == ["minute_of_day", "p5", "p25", "p50", "p75", "p95"]
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def test_overnight_daytime_split_separates_by_hour():
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glucose = _series(
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[
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("2026-01-01 02:00", 3.0), # nacht, laag
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("2026-01-01 03:00", 3.0), # nacht, laag
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("2026-01-01 12:00", 6.0), # dag, in bereik
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("2026-01-01 13:00", 6.0), # dag, in bereik
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]
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)
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result = overnight_daytime_split(glucose, overnight_start=0, overnight_end=6)
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assert result["overnight"]["low"] == pytest.approx(100.0)
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assert result["daytime"]["in_range"] == pytest.approx(100.0)
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def test_overnight_daytime_split_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "mmol"])
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result = overnight_daytime_split(empty)
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assert result["overnight"] == result["daytime"]
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def test_day_of_week_pattern_computes_per_weekday_stats():
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# 2026-01-05 is een maandag
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glucose = _series(
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[
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("2026-01-05 08:00", 6.0),
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("2026-01-05 09:00", 8.0),
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("2026-01-12 08:00", 7.0), # ook een maandag
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]
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)
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result = day_of_week_pattern(glucose)
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monday = result[result["weekday"] == "Maandag"].iloc[0]
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assert monday["count"] == 3
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assert monday["mean_mmol"] == pytest.approx(7.0)
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tuesday = result[result["weekday"] == "Dinsdag"].iloc[0]
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assert tuesday["count"] == 0
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assert pd.isna(tuesday["mean_mmol"])
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def test_day_of_week_pattern_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "mmol"])
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result = day_of_week_pattern(empty)
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assert result.empty
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assert list(result.columns) == ["weekday", "mean_mmol", "in_range_pct", "count"]
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def test_bolus_stats_splits_by_event_type():
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treatments = pd.DataFrame(
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{
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"timestamp": pd.to_datetime(["2026-01-01 08:00", "2026-01-01 12:00", "2026-01-01 20:00"]),
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"eventType": ["Meal Bolus", "Correction Bolus", "Site Change"],
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"insulin": [4.0, 1.5, None],
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"carbs": [45.0, None, None],
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}
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)
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result = bolus_stats(treatments)
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assert result["total_units"] == pytest.approx(5.5)
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assert result["count"] == 2
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assert result["by_type"] == {"Meal Bolus": 4.0, "Correction Bolus": 1.5}
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def test_bolus_stats_handles_empty_input():
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empty = pd.DataFrame(columns=["timestamp", "eventType", "insulin", "carbs"])
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result = bolus_stats(empty)
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assert result == {"total_units": 0.0, "count": 0, "by_type": {}}
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def test_site_interval_stats_splits_by_site_change():
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glucose = _series(
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[
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("2026-01-01 00:00", 6.0),
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("2026-01-05 00:00", 6.0),
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("2026-01-10 00:00", 8.0),
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]
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)
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treatments = pd.DataFrame(
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{
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"timestamp": pd.to_datetime(["2026-01-02 00:00", "2026-01-06 00:00"]),
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"eventType": ["Meal Bolus", "Meal Bolus"],
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"insulin": [3.0, 4.0],
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"carbs": [30.0, 40.0],
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}
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)
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site_changes = pd.DataFrame(
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{
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"timestamp": pd.to_datetime(["2026-01-01 00:00", "2026-01-06 00:00"]),
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"eventType": ["Site Change", "Site Change"],
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"insulin": [None, None],
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"carbs": [None, None],
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}
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)
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result = site_interval_stats(glucose, treatments, site_changes)
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assert len(result) == 2
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assert result.iloc[0]["duration_days"] == pytest.approx(5.0)
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assert result.iloc[0]["total_bolus_units"] == pytest.approx(3.0)
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# de bolus op 6 jan valt binnen het tweede interval ([6 jan, 10 jan))
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assert result.iloc[1]["total_bolus_units"] == pytest.approx(4.0)
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def test_site_interval_stats_handles_no_site_changes():
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glucose = _series([("2026-01-01 00:00", 6.0)])
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treatments = pd.DataFrame(columns=["timestamp", "eventType", "insulin", "carbs"])
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empty_site_changes = pd.DataFrame(columns=["timestamp", "eventType", "insulin", "carbs"])
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result = site_interval_stats(glucose, treatments, empty_site_changes)
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assert result.empty
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def test_summarize_events_handles_empty_input():
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empty = pd.DataFrame(columns=["start", "end", "duration_minutes"])
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result = summarize_events(empty, period_days=14)
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